Showing posts with label open access. Show all posts
Showing posts with label open access. Show all posts

Saturday, January 18, 2020

Open access chemistry publishing options in 2020



Here is an updated list of affordable impact neutral and other select OA publishing options for chemistry

Impact neutral journals
$0 (in 2020) PeerJ chemistry journals. Open peer review. (Disclaimer I am an editor for PeerJ Physical Chemistry)

\$638 (normally \$850) Results in Chemistry. Closed peer review

$1000 F1000Research. Open peer review. Bio-related

$1095 PeerJ - Life and Environment. Open peer review. Bio-related. PeerJ also has a membership model, which may be cheaper than the APC.

$1250 ACS Omega. Closed peer review. WARNING: not real OA. You still sign away your copyright to the ACS.

(The RSC manages "the journal’s chemistry section by commissioning articles and overseeing the peer-review process")

$1350 Cogent Chemistry. Has a "pay what you can" policy. Closed peer review.

$1595 PLoS ONE. Closed peer review.

$1790 Scientific Reports. Closed peer review



Free or reasonably priced journals that judge perceived impact
$0 Chemical Science Closed peer review

$0 CSS Chemistry Closed peer review

$0 Beilstein Journal of Organic Chemistry. Closed peer review.

$0 Beilstein Journal of Nanotechnology. Closed peer review.

$0 ACS Central Science. Closed peer review. ($500-1000 for CC-BY, WARNING: not real OA. You still sign away your copyright to the ACS as far as I know) 

$100 Living Journal of Computational Molecular Science. Closed peer review

€500 Chemistry2. Closed peer review.

£750 RSC Advances. Closed peer review.


Let me know if I have missed anything.




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Wednesday, January 16, 2019

Open access chemistry publishing options in 2019



Here is an updated list of affordable impact neutral and other select OA publishing options for chemistry

Impact neutral journals
$0 (in 2019) PeerJ chemistry journals. Open peer review. (Disclaimer I am an editor on PeerJ Physical Chemistry)

$425 (normally $850) Results in Chemistry. Closed peer review

$750 ACS Omega (+ ACS membership $166/year). Closed peer review. WARNING: not real OA. You still sign away your copyright to the ACS.

$1000 F1000Research. Open peer review. Bio-related

$1095 PeerJ - Life and Environment. Open peer review. Bio-related. PeerJ also has a membership model, which may be cheaper than the APC.

(The RSC manages "the journal’s chemistry section by commissioning articles and overseeing the peer-review process")

$1350 Cogent Chemistry. Has a "pay what you can" policy. Closed peer review.

$1595 PLoS ONE. Closed peer review.

$1790 Scientific Reports. Closed peer review



Free or reasonably priced journals that judge perceived impact
$0 Chemical Science Closed peer review

$0 Beilstein Journal of Organic Chemistry. Closed peer review.

$0 Beilstein Journal of Nanotechnology. Closed peer review.

$0 ACS Central Science. Closed peer review. ($500-1000 for CC-BY, WARNING: not real OA. You still sign away your copyright to the ACS as far as I know) 

$100 Living Journal of Computational Molecular Science. Closed peer review

€500 Chemistry2. Closed peer review.

£750 RSC Advances. Closed peer review.


Let me know if I have missed anything.




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Friday, July 6, 2018

Why I just sent my paper to Journal of Chemical Physics

Image result for journal of chemical physics

The last few years I have published my papers (i.e. the ones where I'm corresponding author) open access as much as possible, but I just sent my latest paper to JCP. Here's why.

Why not OA?
The paper isn't "impactful" enough for free OA options such as Chemical Science and ACS Central Science.

When it comes to impact-neutral journals my main consideration is price. My go-to journal in the past has been PeerJ where I purchased a life-time membership years ago. My two co-authors also have memberships so we could have published the article for free. Unfortunately, the current paper is not "bio enough" for PeerJ.

It's also not "organic" enough for Beilstein Journal of Organic Chemistry (which is free) and it doesn't fall in to any of the categories for Living Journal of Computational Molecular Science ($100).

The next-most cheapest options are ACS Omega ($750) or RSC Advances (£500 ≈ $670). When I published in ACS Omega earlier this year I discovered that you still sign away copyright to the ACS who then graciously agrees to publish it under an CC license if you pay them $750! In my book that's not OA and I don't think I'll publish there again.

I was all set to send it to RSC Advances but a few months ago I discovered that the RSC is engaging in the sort of behaviour I would normally expect from Elsevier. I don't see why I should support the RSC with an additional £500.

That's the only journals I know of with APCs less than $1000 and I simply don't have that kind of money to spend on publications right now.

Why JCP?
In March 2016, AIP Publishing switched to a new publishing agreement where authors retain copyright but give the AIP an exclusive licence to publish. As a copyright owner you are allowed to, for example

1. Reprint portions of the Work (excerpts, figures, tables) in future works created by the
Author, in keeping with professional publication ethics.
2. Post the Accepted Manuscript (AM) to their personal web page or their employer’s
web page immediately after acceptance by AIP Publishing.
3. Deposit the AM in an institutional or funder-designated repository immediately after
acceptance by AIP Publishing.
5. Reprint the Version of Record (VOR) in print collections written by the Author, or in the
Author’s thesis or dissertation. It is understood and agreed that the thesis or
dissertation may be made available electronically on the university’s site or in its
repository and that copies may be offered for sale on demand.
10. Post the VOR to their personal web page or their employer’s web page 12 months
after publication by AIP Publishing.
11. Deposit the VOR in an institutional or funder-designated repository 12 months after
publication by AIP Publishing.
12. Update a prior posting with the VOR on a noncommercial server such as arXiv, 12
months after publication by AIP Publishing.

Just to be clear, most non-OA journals allow you to post the accepted manuscript in a repository 12 months after publication, while JCP allows you to do this immediately as well as posting the version of record (i.e. the typeset manuscript!) 12-months later.

So it's not OA, because reuse is restricted, but the version of record will be openly accessible after 12 months. And at least I feel like I am dealing with a publisher that is not looking for any opportunity to screw me, or the scientific community in general, over. But maybe I'm just getting sentimental in my old age ...



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Tuesday, January 23, 2018

Open access chemistry publishing options in 2018

I just noticed that my go-to journal increased its APC again.* Now there's a flat fee of $1095 so I am re-evaluating my options for impact neutral OA publishing. I don't think PeerJ is greedy, so I think the most likely explanation is be that their old model was not sustainable. I now feel I have been a bit to hard on some other OA publishers (e.g. here and here, but not here).

While price and impact-neutrality is the main consideration, open peer review is a nice bonus that I became accustomed to from PeerJ. In my experience it makes for much better reviews and keeps the tone civil.

Impact neutral journals
$750 ACS Omega (+ ACS membership $166/year). Closed peer review. WARNING: not real OA. You still sign away your copyright to the ACS.

$1000 F1000Research. Open peer review. Bio-related

$1095 PeerJ. Open peer review. Bio-related. PeerJ also has a membership model, which may be cheaper than the APC.

(The RSC manages "the journal’s chemistry section by commissioning articles and overseeing the peer-review process")

$1350 Cogent Chemistry. Has a "pay what you can" policy. Closed peer review.

$1495 PLoS ONE. Closed peer review.

$1760 Scientific Reports. Closed peer review



Free or reasonably priced journals that judge perceived impact
$0 Chemical Science Closed peer review

$0 Beilstein Journal of Organic Chemistry. Closed peer review.

$0 Beilstein Journal of Nanotechnology. Closed peer review.

$0 ACS Central Science. Closed peer review. ($500-1000 for CC-BY, WARNING: not real OA. You still sign away your copyright to the ACS as far as I know) 

$100 Living Journal of Computational Molecular Science. Closed peer review

€500 Chemistry2. Closed peer review.

£500 RSC Advances. Closed peer review. (Normally £750)


Let me know if I have missed anything.




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Monday, January 16, 2017

Open access chemistry publishing options in 2017

I just noticed that my go-to journal increased its APC again.*  Now there's a flat fee of $1095 so I am re-evaluating my options for impact neutral OA publishing. I don't think PeerJ is greedy, so I think the most likely explanation is be that their old model was not sustainable.  I now feel I have been a bit to hard on some other OA publishers (e.g. here and here, but not here).

While price and impact-neutrality is the main consideration, open peer review is a nice bonus that I became accustomed to from PeerJ. In my experience it makes for much better reviews and keeps the tone civil.

Impact neutral journals

$0. Royal Society Open Science has an APC waiver and open peer review. In 2018 the APC will become £900. (The RSC manages "the journal’s chemistry section by commissioning articles and overseeing the peer-review process")

€750. Research Ideas and Outcomes (disclaimer: I am subject editor), open peer review.

$1000 F1000Research. Open peer review

$1095 PeerJ. Open peer review.

$1350 Cogent Chemistry. Has a "pay what you can" policy. Closed peer review. HT +Stephan P. A. Sauer

$1495 PLoS ONE. Closed peer review.

$1675 Scientific Reports. Closed peer review

$2000 ACS Omega. Price for CC-BY by ACS member ($140/year). Closed peer review.

So it looks like Royal Society Open Science is the next thing for me to try, as long as the APC waiver is in place.

Free or reasonably priced journals that judge perceived impact

$0 Chemical Science Closed peer review

$0 Beilstein Journal of Organic Chemistry. Closed peer review. HT +Wendy Patterson

$0 Beilstein Journal of Nanotechnology. Closed peer review. HT +Wendy Patterson

$500 ACS Central Science Price for CC-BY by ACS member ($140/year). Closed peer review.

£500 RSC Advances. Closed peer review. (Normally £750)

Let me know if I have missed anything.

Last update: 2017.03.05

*I just noticed that the membership model still exists though the price has increased. I already have a premium membership, so this may still be a viable option for me. If you are a single author or have only one co-author this is still the way to go.


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Wednesday, April 13, 2016

Reviewing for PeerJ: it's the little (and the not so little) things

I just did my first review for PeerJ and it was a real pleasure because there are a lot of "little things" that make your reviewing life easier:

1. Figures/tables are in the text and, get this, the captions are immediately above/below the corresponding figure/table.  Some other journals also do this, but not enough.

2. I annotate the mss in a pdf reader and usually this is a frustrating experience since the publisher generated pdf has all sorts of "quirks" that make highlighting and copying text hit and miss.  The previous pdf I reviewed turned every page with a figure into an image!  Annotating/copying in the PeerJ pdf worked flawlessly.

3. The pdf contained a 3 front pages with the due date, a summary of the review criteria, a link to the page with the supplementary material, and a link to the page where I should submit my review.  No hunting around for the email with the link! I teared up a little bit when I saw that.

Other "little things" include stuff like not having to rank the perceived importance or impact of the work on some bogus 1-10 scale, a strict policy on making the raw data available, and a button to click to make my review non-anonymous.




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Tuesday, April 5, 2016

ACS Omega was too expensive

2018.01.23 update: I just noticed that the APC has been lowered to \$750 + 1 year ACS membership for corresponding author.  This is actually a reasonably good deal, so I am changing title.

Disclaimer: I applied to be a co-editor of this journal and was not selected.

ACS Omega has just announced its APCs: \$1500 (\$2000) under the ACS Authors Choice (CC-BY or CC-BY-NC-ND) license for members and an additional \$500 for non-members (since full membership costs $162, this is the real additional cost for one yearly publication).

The ACS Authors Choice license is not open access: under the ACS Authors Choice license you assign copyright to the ACS.  While
For non-commercial research and education purposes only, users may access, download, copy, display and redistribute articles as well as adapt, translate, text and data mine content contained in articles, ... 
you still can't, for example, use a figure from such an article in a book chapter without the ACS permission.  Also, the ACS can, for example, sell your article or your figures.

So the cost for to publish OA is ACS Omega is $2000.  That's more expensive than other impact neutral OA journals: PLoS One (\$1495), Scientific Reports (\$1495), F1000Research (\$1000), Rio Journal (\$850), PeerJ (\$100/author, Bio-only), and Royal Society Open Science ($0, for now).

Since all journals are impact neutral and provide quick review (AFAIK) price is the main considerations and I see no reason to pay more for to publish in ACS Omega.




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Tuesday, December 15, 2015

My Vision for ACS Omega

Update: ACS Omega is too expensive

A few weeks ago I was invited to submit my application (a vision statement and a CV) for a co-editor-in-chief position at ACS Omega.  Here's my vision statement.  I have made one change: at the time I didn't know the final name of the journal and used a working title instead.  The application is still pending.

My Vision for ACS Omega
Jan H. Jensen
University of Copenhagen
Twitter: @janhjensen


Open Access and Open Science: Leading by Example
Since 2012 I have published the bulk of my papers in PLoS ONE and PeerJ - one of the few chemists to do so. My switch to OA was catalyzed mainly by the Research Work Act  - legislation that sought to “prohibit open-access mandates for federally funded research and effectively revert the US NIH Public Access Policy, which requires taxpayer-funded research to be freely accessible online” (1). The RWA was clearly a result of lobbying efforts by commercial publishers and, in my opinion, designed to maximize profits at the expense of servicing science. This got me to try and, ultimately, embrace OA (2) and open science.


I have found the lack of “perceived importance” and “scope” as editorial criteria at PLoS ONE and PeerJ incredibly liberating: they allow me to be more innovative (i.e. take more chances) in my research and makes the papers easier to write. Equally liberating is the fact that my work can be used by me or anyone else without restrictions under the CC-BY licence, which for me and most other open access activists is synonymous with OA.


I deposit all my manuscripts on arXiv or PeerJ Preprints prior to submission. I sign all my manuscript reviews, I post my reviews on Publons.com (3), and I publish all the reviews I receive, either on PeerJ (4) or on my blog (5). Furthermore I founded Computational Chemistry Highlights (6) in 2012 that openly reviews important recent papers in computational and theoretical chemistry. I actively campaign for these practices on Twitter and I write extensively about open access and open science on my blog (7). As co-editor-in-chief of ACS Omega I would have the track record needed to be an effective advocate of OA for chemistry.


ACS Omega: The Journal of First Choice
ACS Omega has the potential to become the largest chemistry journal in the world and this will be my goal as co-editor-in-chief. Obviously, a lot of papers that are rejected by other ACS journal because of scope and lack of perceived importance should be funneled to ACS Omega. However, my vision for ACS Omega is as a journal of first choice due to its purely objective review criteria that welcomes innovative ideas and frank discussions of the merits and weaknesses of the results.


In fact I propose that a self-critical discussion of possible limitations of the study is a mandatory part of an ACS Omega paper, with the understanding that it will not hurt the chances of acceptance. This is how science is supposed to work: as a scientist you are supposed to be your own worst critic, but you wouldn’t know it from reading the current literature. I would like ACS Omega to be open to all types of papers in addition to conventional research articles including insights/perspectives, software notes, and replication studies. In my view science advances incrementally and benefits from input at every stage: one should publish early and publish often. I would also like to implement eLife’s Research Advances, “a short article that allows the authors of an eLife paper to publish new results that build on their original research paper” in some way (8).  


ACS Omega: The Most Affordable OA (CC-BY)  Option
If one removes the “perceived importance” and “scope” criteria from the editorial decision process then the only meaningful criteria for where to publish is the price. This is the reason I switched from PLoS ONE to PeerJ. Obviously I cannot be a co-editor-in-chief of a journal where I will not publish myself. ACS Omega must therefore offer an APC of $500 or less (or a PeerJ-style APC model) for CC-BY for me to interested in the position. I currently pay an average of $300/paper to publish CC-BY in PeerJ, so $500 is already a compromise for me.


With ACS Omega ACS has a unique chance to fulfill its mission to “advance the broader chemistry enterprise and its practitioners for the benefit of Earth and its people” by making the APC for CC-BY $0. Think of ACS Omega as part of the ACS’s other activities such as education, outreach, and awards and not as a means of generating funds for such activities. I strongly urge the ACS to consider this option and will happily do the job for free should the ACS choose to do so.


To keep the APC as low as possible I suggest several cost-saving measures:
  • Typesetting is optional and costs extra for the author. Your CV says “Peer Reviewed Publications”, not “Typeset Publications” and I predict many chemists would gladly do their own formatting (perhaps given suitable template) if they can save $500/paper. Other disciplines are catching onto this (9,10) and ACS Omega might as well be on the forefront in chemistry.
  • A smaller editorial board relative to journal volume. I predict that ACS Omega editors will be able to handle more submissions compared to other ACS journals due to ACS Omega’s more objective editorial criteria and more open review process (see below).
  • Less travel/more on-line communication. Communication within other ACS journals are still based on the premise that most editors reside within the US and would go to ACS meetings anyway. We need to do things differently at ACS Omega for purely practical reasons, but this will also lower costs.
  • I would also like to investigate the possibility of corporate sponsorship of the journal to see if it can be done in an ethical way and without conflict of interest issues.         


ACS Omega: A Truly Open Journal
I strongly believe that openly sharing preprints prior to submission greatly benefits science. As co-editor-in-chief I will publicly encourage authors to deposit preprints prior to submission to ACS Omega. Furthermore, I will work with arXiv on establishing a chemistry section and encourage the ACS to support arXiv. The current running costs of arXiv is $826,000. I think the ACS should contribute 10-15% of the running costs if arXiv establishes a chemistry section. Alternatively, the ACS should start their own preprint server.


I am a strong believer in open peer review. I suggest that ACS Omega follows the PeerJ model where the reviewers choose whether to remain anonymous, while the authors choose whether to publish the reviews. If the authors choose to publish the reviews there should be an option to append it to the manuscript when downloading the pdf. I realize that implementing such a feature increases the cost of the journal, so alternatively the journal should encourage reviewers to post their reviews on Publons.com.  Related to this I suggest that editor’s names be openly associated with individual papers.


I am a strong believer in open post publication peer review and I would like to see a comment section for each ACS Omega paper. I realize that implementing such a feature increases the cost of the journal, so alternatively the journal should encourage reviewers to post their comments on PubPeer. Similarly, I suggest a partnership with Altmeric.com to keep track of PubPeer discussions, Tweets and blogposts on individual papers.


I am a strong believer in open data and code. ACS Omega should strongly encourage this practice and make it an explicit part of the editorial decision (11) for several reasons: Often the data turns out to be the most important contribution (e.g. data for benchmarking or modeling), it is crucial for informed pre- and post-publication peer reviews, and it helps ensure reproducibility. I am very happy to see that ACS already has partnered with Figshare.


ACS Omega: Transforming the Field of Chemistry
Chemistry is in my opinion the least open of the natural sciences and that as result the field is not progressing as fast as it could. Most chemistry papers are not accessible to the taxpayers who paid for the work (12). The ideas and data within these papers remain inaccessible for other researchers for months or years until “the data tells a story”, “there’s enough for a JACS paper”, or while the manuscript is makes its way down the “impact ladder”. The criterion that something has to be demonstrably “first” to be published means that ideas and data are jealously guarded and most conference talks are used to rehash published results and ideas rather than to get feedback on or develop new ideas. The ACS shares a large part of the blame for this state of affairs as it tends to “set the tone” within our community. For example, all ACS journals have “importance” as a criteria, and aggressively promote an impact factor-based journal hierarchy. Many ACS journals forbid preprint depositions and the ones that allow it do not state so explicitly, leading to a “better not to, be on the safe side” attitude among most chemists.


However, with ACS Omega, the ACS has the unique opportunity to almost single handedly change all this and, ultimately, increase the pace of discovery and genuine innovation in chemistry. As PLoS ONE has shown for the bio/medical community, this is done by actively and explicitly encouraging openness on all fronts - both in the journal policies and by the people who lead it.  I would be honored to be part of this transformation as co-editor-in-chief and would work tirelessly to make it happen.


References





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Sunday, November 15, 2015

Why I chose to stay on as a subject editor for the RIO Journal



Two months ago I wrote about my decision to tentatively agree to be a subject editor for the RIO Journal.

The Price (APC)
The APC for a traditionally peer reviewed research article in the RIO Journal is €750 (~\$850).  This is significantly more than what I usually pay at PeerJ (~\$300), but only a little higher than the \$695 per article price they recently announced.  The APC is significantly less expensive than PLoS ONE (whose APC recently increased to \$1450 and the no-questions-asked waiver fee appears to be gone) and less than SpringerPlus (\$1085) and F1000Research (\$1000). RIO Journal is thus the second-cheapest OA journal I know of.  As such I would recommend RIO Journal to people who publish non-bio or review papers. (Well right now I would recommend Royal Society Open Science, since they are waiving their APCs for a while).

Getting "publishing-credit" for my research proposals and other research output
It turns out RIO Journal does not offer traditional peer review for research proposals so posting a proposal there is not very different from posting on a pre-print server with a comment section, such as PeerJPreprints.  The main difference is that it would be typeset at the RIO Journal but at a substantial cost (€190/€650 depending on length).  No thanks, I'll go with PeerJPreprints or ArXiv or FigShare or just posting the pdf on Google Docs.

An interesting alternative
Shortly after I wrote the first post on the RIO Journal, Tim Gowers announced an arXiv overlay journal called Discrete Analysis.  The main difference from a traditional OA journal is that the papers are not typeset (and hosted on arXiv).  The APC is \$10 (which is waived for the foreseeable future).  

I actually think this is the way forward for scientific publishing long term.

Conclusion
If I write a paper that is outside the scope of PeerJ, and if Royal Society Open Science starts charging, then I might submit to RIO Journal based on the current APCs.  This would also be my advice to my colleagues should they ask about OA publishing options.  Thus, I'll stay on for now as subject editor. 


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